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1

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)

Fluck, Juliane, Madan, Sumit, Ansari, Sam, Kodamullil, Alpha T., Karki, Reagon, Rastegar-Mojarad, Majid, Catlett, Natalie L., Hayes, William, Szostak, Justyna, Hoeng, Julia, Peitsch, Manuel

Journal:

Year:

2016

Language:

english

File:

PDF, 698 KB

english, 2016

2

S26.2: Using Text Mining Networks for the Context Specific Interpretation of Gene Expression Data

Christian Gieger, Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Achim Tresch, Hartwig Deneke

Journal:

Biometrical Journal

Year:

2004

Language:

english

File:

PDF, 73 KB

english, 2004

3

The future of text mining in genome-based clinical research

Christian Gieger, Hartwig Deneke, Juliane Fluck

Journal:

Year:

2003

Language:

english

File:

PDF, 128 KB

english, 2003

4

Proceedings of the Second International Symposium for Semantic Mining in Biomedicine

Sophia Ananiadou, Juliane Fluck

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 193 KB

english, 2006

5

Information extraction technologies for the life science industry

Juliane Fluck, Marc Zimmermann, Günther Kurapkat, Martin Hofmann

Journal:

Drug Discovery Today: Technologies

Year:

2005

Language:

english

File:

PDF, 278 KB

english, 2005

6

Text mining for systems biology

Fluck, Juliane, Hofmann-Apitius, Martin

Journal:

Drug Discovery Today

Year:

2014

Language:

english

File:

PDF, 210 KB

english, 2014

7

Microarrays: How Many Do You Need?

Zien, Alexander, Fluck, Juliane, Zimmer, Ralf, Lengauer, Thomas

Journal:

Journal of Computational Biology

Year:

2003

Language:

english

File:

PDF, 1.25 MB

english, 2003

8

Information Extraction in the Life Sciences: Perspectives for Medicinal Chemistry, Pharmacology and Toxicology

Zimmermann, Marc, Fluck, Juliane, Thi, Le, Kolarik, Corinna, Kumpf, Kai, Hofmann, Martin

Journal:

Current Topics in Medicinal Chemistry

Year:

2005

Language:

english

File:

PDF, 175 KB

english, 2005

9

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track

Madan, Sumit, Hodapp, Sven, Senger, Philipp, Ansari, Sam, Szostak, Justyna, Hoeng, Julia, Peitsch, Manuel, Fluck, Juliane

Journal:

Year:

2016

Language:

english

File:

PDF, 943 KB

english, 2016

10

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language

Rinaldi, Fabio, Ellendorff, Tilia Renate, Madan, Sumit, Clematide, Simon, van der Lek, Adrian, Mevissen, Theo, Fluck, Juliane

Journal:

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

11

Text Mining in Full Text Articles -- Methodical and Represenation Issues

Klinger, Roman, Pesch, Robert, Mevissen, Theo, Fluck, Juliane

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 1.33 MB

english, 2009

12

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track

Madan, Sumit, Szostak, Justyna, Komandur Elayavilli, Ravikumar, Tsai, Richard Tzong-Han, Ali, Mehdi, Qian, Longhua, Rastegar-Mojarad, Majid, Hoeng, Julia, Fluck, Juliane

Journal:

Year:

2019

Language:

english

File:

PDF, 2.07 MB

english, 2019

13

Normal Human Primary Fibroblasts Undergo Apoptosis in Three-Dimensional Contractile Collagen Gels

Fluck, Juliane, Querfeld, Christiane, Cremer, Anja, Niland, Stephan, Krieg, Thomas, Sollberg, Stephan

Journal:

The Journal of Investigative Dermatology

Year:

1998

Language:

english

File:

PDF, 278 KB

english, 1998

14

Contraction-Dependent Apoptosis of Normal Dermal Fibroblasts

Niland, Stephan, Cremer, Anja, Fluck, Juliane, Eble, Johannes A, Krieg, Thomas, Sollberg, Stephan

Journal:

The Journal of Investigative Dermatology

Year:

2001

Language:

english

File:

PDF, 304 KB

english, 2001

15

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

Wollscheid, Bernd, Bausch-Fluck, Damaris, Henderson, Christine, O'Brien, Robert, Bibel, Miriam, Schiess, Ralph, Aebersold, Ruedi, Watts, Julian D

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 930 KB

english, 2009

16

Corrigendum: Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

Wollscheid, Bernd, Bausch-Fluck, Damaris, Henderson, Christine, O'Brien, Robert, Bibel, Miriam, Schiess, Ralph, Aebersold, Ruedi, Watts, Julian D

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 64 KB

english, 2009

17

Autocrine proliferating B cells are susceptible to terminal differentiation and apoptosis

Fluck, Juliane, Schachtschneider, Susanne, Abken, Hinrich

Journal:

Cell Death & Differentiation

Year:

1997

Language:

english

File:

PDF, 424 KB

english, 1997

18

ProMiner: rule-based protein and gene entity recognition

Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 284 KB

english, 2005

19

The Autoimmune Disease Database: a dynamically compiled literature-derived database

Thomas Karopka, Juliane Fluck, Heinz-Theodor Mevissen, Änne Glass

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 515 KB

english, 2006

20

Deletion of P399_E401 in NADPH cytochrome P450 oxidoreductase results in partial mixed oxidase deficiency

Christa E. Flück, Delphine Mallet, Gaby Hofer, Dinane Samara-Boustani, Juliane Leger, Michel Polak, Yves Morel, Amit V. Pandey

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 825 KB

english, 2011

21

Concept-Based Semi-Automatic Classification of Drugs

Gurulingappa, Harsha, Kolářik, Corinna, Hofmann-Apitius, Martin, Fluck, Juliane

Journal:

Journal of Chemical Information and Modeling

Year:

2009

Language:

english

File:

PDF, 566 KB

english, 2009

22

Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports

Harsha Gurulingappa, Abdul Mateen Rajput, Angus Roberts, Juliane Fluck, Martin Hofmann-Apitius, Luca Toldo

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 267 KB

english, 2012

23

Mining biomarker information in biomedical literature

Erfan Younesi, Luca Toldo, Bernd Müller, Christoph M Friedrich, Natalia Novac, Alexander Scheer, Martin Hofmann-Apitius, Juliane Fluck

Journal:

BMC Medical Informatics and Decision Making

Year:

2012

Language:

english

File:

PDF, 1019 KB

english, 2012

24

IDENTIFYING GENE-SPECIFIC VARIATIONS IN BIOMEDICAL TEXT

KLINGER, ROMAN, FRIEDRICH, CHRISTOPH M., MEVISSEN, HEINZ THEODOR, FLUCK, JULIANE, HOFMANN-APITIUS, MARTIN, FURLONG, LAURA I., SANZ, FERRAN

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.18 MB

english, 2007

25

[ACM Press the sixth annual international conference - Washington, DC, USA (2002.04.18-2002.04.21)] Proceedings of the sixth annual international conference on Computational biology - RECOMB '02 - Microarrays

Zien, Alexander, Fluck, Juliane, Zimmer, Ralf, Lengauer, Thomas

Year:

2002

Language:

english

File:

PDF, 339 KB

english, 2002

26

Towards a Pathway Inventory of the Human Brain for Modeling Disease Mechanisms Underlying Neurodegeneration

Iyappan, Anandhi, Gündel, Michaela, Shahid, Mohammad, Wang, Jiali, Li, Hui, Mevissen, Heinz-Theodor, Müller, Bernd, Fluck, Juliane, Jirsa, Viktor, Domide, Lia, Younesi, Erfan, Hofmann-Apitius, Martin

Journal:

Journal of Alzheimer's Disease

Year:

2016

Language:

english

File:

PDF, 2.65 MB

english, 2016

27

[IEEE 2016 20th International Conference Information Visualisation (IV) - Lisbon, Portugal (2016.7.19-2016.7.22)] 2016 20th International Conference Information Visualisation (IV) - Lyrics Word Clouds

Burch, Michael, Fluck, Tobias, Freund, Julian, Walzer, Thomas, Kloos, Uwe, Weiskopf, Daniel

Year:

2016

Language:

english

File:

PDF, 717 KB

english, 2016

28

Annals of Computer Science and Information Systems [IEEE 2017 Federated Conference on Computer Science and Information Systems - (2017.9.3-2017.9.6)] Proceedings of the 2017 Federated Conference on Computer Science and Information Systems - Document Clustering using a Graph Covering with Pseudostable Sets

Dörpinghaus, Jens, Schaaf, Sebastian, Fluck, Juliane, Jacobs, Marc

Year:

2017

Language:

english

File:

PDF, 375 KB

english, 2017

29

Percutaneous transhepatic biliary tract embolization using gelatin sponge

Augustin, Anne Marie, Cao, Victoria, Fluck, Friederika, Kunz, Julian, Bley, Thorsten, Kickuth, Ralph

Journal:

Acta Radiologica

Year:

2019

File:

PDF, 371 KB

2019

30

Lifing the Effects of Crystallographic Orientation on the Thermo-Mechanical Fatigue Behaviour of a Single-Crystal Superalloy

Smith, Richard, Lancaster, Robert, Jones, Jonathan, Mason-Flucke, Julian

Journal:

Year:

2019

Language:

english

File:

PDF, 5.25 MB

english, 2019

31

Text Mining in Full Text Articles -- Methodical and Represenation Issues

Klinger, Roman, Pesch, Robert, Mevissen, Theo, Fluck, Juliane

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 1.33 MB

2009

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